PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g024980.1
Common NameMTR_1g024980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 404aa    MW: 44137.1 Da    PI: 9.4403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g024980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016175197223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +C  Cg++F+  ++L+ H+ + H
  Medtr1g024980.1 175 RCDQCGEVFPKIESLELHQAVrH 197
                      8******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.891174202IPR007087Zinc finger, C2H2
PROSITE patternPS000280174197IPR007087Zinc finger, C2H2
SuperFamilySSF563992.97E-20199400No hitNo description
Gene3DG3DSA:3.90.228.104.7E-10201400IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MALLNSLPEQ SHPKTKTTLP KHKQKNQQQQ KQKPPSSWDQ IKNLLTCKQI EVSRVHDPSK  60
PNNNNGYSKL GSSCSSICSF RDVVHGNTRV VHRSDNSSPE SSILGQETSL LKRKPVNASS  120
TRSASCSGKS SNGGGNYTSS SSSRGMQFRK LSGCYECHMI VDPSRLPIPR STLCRCDQCG  180
EVFPKIESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKRETPMCKI ERILKVHNTQ  240
RTIQRFEECR DAVKSRASNT TKKNPRCAAD GNELLRFHST SLSCALGASG SSTLCAVPGC  300
GVCNIIRHGF QKKGGVKTNA SSGRAHDNSV GEDSRRAMLV CRVIAGKVKR VAEEGARVVS  360
EEEMVCFDST AGNAGSYSNL EDLTVFNPRA ILPCFVVIYE VLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.38160.0flower| glandular trichome| leaf| pod| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1496060.0BT149606.1 Medicago truncatula clone JCVI-FLMt-20P4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003589472.10.0C2H2-like zinc finger protein
TrEMBLG7I7600.0G7I760_MEDTR; C2H2-like zinc finger protein
STRINGVIT_18s0001g14130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-144C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]